PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA024674-PA
Common NameOsI_25238
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 256aa    MW: 27583.4 Da    PI: 7.3943
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA024674-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11138185455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  BGIOSGA024674-PA 138 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQSLQ 185
                       8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.69E-11132189No hitNo description
SuperFamilySSF474592.88E-18132201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-18134200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDPAPSLAAE LWRPHHHRHH FEASSVVTDQ GSGSRGGGGS GRRRPRSDAG PEDDDLSKVV  60
STSAASGGGG GGGQDSDAPE AKRLKPMKSS DKNDSLRTEA GTDSGNSSKA ADKNATPPEP  120
PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL VPGCNKVIGK ASVLDEIINY  180
IQSLQHQVEF LSMKLEAVNS HMINGIVAFP SKDFGAQPYN TAAGLTFDPQ TTREFAQGST  240
SEWLHMQIGN AYERVT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.904611e-127flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976068621e-127
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426450.0AK242645.1 Oryza sativa Japonica Group cDNA, clone: J090025G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645823.10.0PREDICTED: transcription factor bHLH79
SwissprotQ9LV178e-56BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A0E0Q5740.0A0A0E0Q574_ORYRU; Uncharacterized protein
TrEMBLA2YJ330.0A2YJ33_ORYSI; Putative uncharacterized protein
TrEMBLA3BHG50.0A3BHG5_ORYSJ; Uncharacterized protein
STRINGLOC_Os07g09590.10.0(Oryza sativa Japonica Group)
STRINGBGIOSGA024674-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-68BIG PETAL P